Home   >   CSC-OpenAccess Library   >    Manuscript Information
JEVBase: An Interactive Resource for Protein Annotationof JE Virus
Manas Ranjan Dikhit, Ganesh Chandra Sahoo, Pradeep Das
Pages - 59 - 66     |    Revised - 30-09-2009     |    Published - 21-10-2009
Volume - 3   Issue - 4    |    Publication Date - August 2009  Table of Contents
JEVBase, SVMProt, , Protein annotation database, Functional database, Japanese encephalitis
Databases containing proteome ic information have become indispensable for virology related studies. Rajendra Memorial Research Institute of Medical Sciences (RMRIMS) has compiled and maintained a functional and molecular annotation database (http://www.jevbase.biomedinformri.org) commonly referred to as JEVBase. This database facilitates significant relationship between molecular analysis, cleavage sites, possible protein functional families assigned to different proteins of Japanese encephalitis virus (JEV). Identification of different protein functions and molecular analysis facilitates a mechanistic understanding of (JEV) infection and opens novel means for drug development. JEVBase database aims to be a resource for scientists working on JE virus.
CITED BY (1)  
1 Dikhit, M. R., Nathasharma, Y. P., Patel, L., Rana, S. P., Sahoo, G. C., & Das, P. (2011). A comparative protein function analysis databaseof different Leishmania strains. Bioinformation, 6(1), 20.
1 Google Scholar 
2 ScientificCommons 
3 Academic Index 
4 CiteSeerX 
5 refSeek 
6 iSEEK 
7 Socol@r  
8 ResearchGATE 
9 Bielefeld Academic Search Engine (BASE) 
10 Scribd 
11 WorldCat 
12 SlideShare 
14 PdfSR 
15 Free-Books-Online 
A. Abdo and N. Salim. “Inference Networks for Molecular Database Similarity Searching”. International Journal of Biometric and Bioinformatics, 2 (1) 1-16, 2008
C.Z. Cai, L.Y. Han, Z.L. Ji, X. Chen and Y.Z. Chen. “SVM-Prot: web-based support vector machine software for functional classification of a protein from its primary sequence”. Nucleic Acids Research, 31, 3692–3697, 2003
D. Eisenberg, C.A. Marcotte, I. Xenarios and T.O. Yeates. “Protein function in the post-genomic era”. Nature , 405, 823–826, 2000
Davidson, S.B., Overton, C., Buneman, P., 1995. Challenges in integrating biological data sources. Journal of Computational Biology, 2(4):557–572.
E.L. Buescher and W. F. Scherer. “Ecologic studies of Japanese encephalitis virus in Japan. IX. Epidemiologic correlations and conclusions”. Am. J. Trop. Med. Hyg., 8,719-722, 1959
F. Zhang, W. Ma, L. Zhang, M. Aasa-Chapman and H. Zhang. “Expression of particulate-form of Japanese encephalitis virus envelope protein in a stably transfected Drosophila cell line”. Virology, 4, 17-24, 2007
G.C. Sahoo, M.R. Dikhit and P. Das. “ Functional assignment to JEV proteins using SVM”. Bioinformation, 3, 1-7, 2008
H. Sumiyoshi, C. Mori, I. Fuke, K. Morita, S. Kuhara, J. Kondou, Y. Kikuchi, H. Nagamatu and A. Igarashi. “Complete nucleotide sequence of the Japanese encephalitis virus genome RNA”. Virology, 161, 497-510, 1987
M. R. Dikhit , S.P. Rana, P. Das, and Ganesh Chandra Sahoo. “ CHPVDB ? a sequence annotation database for Chandipura Virus”. Bioinformation. 3(7): 299–302, 2009
S. Henikoff, E. A. Greene, S. Pietrokovski, P. Bork,T.K. Attwood and L. Hood. “Gene families: the taxonomy of protein paralogs and chimeras”. Science, 278, 609–614, 1997
T. Solomon, L. T. T. Thao, N. M. Dung, R. Kneen, N. T. Hung, A. Nisalak, D. W. Vaughn, J. Farrar, T. T. Hien, N. J. White and M. J. Cardosa. “ Rapid Diagnosis of Japanese Encephalitis by Using an Immunoglobulin M Dot Enzyme Immunoassay”. Journal of Clinical Microbiology, 36, 2030-2034, 1998
X. Liu, S. Cao, R. Zhou, G. Xu, S. Xiao, Y. Yang, M. Sun, Y. Li and H. Chen. “Inhibition of Japanese encephalitis virus NS1 protein expression in cell by small interfering RNAs”, Virus Genes, 33, 69-75, 2006
Y. Qing. “Bioinformatics databases and tools in virology research: An overview”. In Silico Biology, 8, 0008 ,2008
Mr. Manas Ranjan Dikhit
Rajendra Memorial Research Institute of Medical Sciences - India
Mr. Ganesh Chandra Sahoo
- India
Mr. Pradeep Das
- India